PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0459471

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 939aa MW: 103314 Da PI: 5.8321

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0459471	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.6	7.8e-07	607	627	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f +G C +GdrC F+H RcHm_v2.0_Chr3g0459471 607 PCDNFVNNGSCIRGDRCLFSH 627 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 939 aa Download sequence
MEEPQFEKEK PSETLISLPP HRRRSLKSET HRTLLRILSH CYDVLQHPDQ NVPPELNQDN 60 GSNELGETTA KEGGRNVELV EPDSRKCDDS AAQQELVAVE RCDGKGLRER IGQIEDFFSE 120 EGNEELSGQM DFEDTFGINF GDLEFGPEEM LMDELEQIVK GNDDNAPKLS TGSLVENEGA 180 NDKVELLSNQ EQRDDSQHNA TVRPENADQV VIGEIHNEGE CNECSHSLLK TSSLDVEPII 240 QQKAMETSVS SGSAEVSLIP ITEVAQFEVP EHFSQKVPEA FVFPLDTDMV GDASKPSQSK 300 SWSHKADDLE GEHEIQPNEN KMEMVCTGNA VNCPNHMNDG DMEEGEISDD DGMDDRSTNM 360 LLHDTARCEE NKVNEFQIVK DVNGQKEHSG KEAIGREFDS NSFLMSIADN VQNPRGVELR 420 ESKTKLIGRP GVVQGKTMEA IKENGYDPSL ESRRIEEKDS GIGRGIGFQE ACTNNQASHE 480 KISQNYEAGS CGTSSEDKVD AGAANKRRRG PPSKEKKQRK KAKERLKRAE MNRKLGVKRL 540 KLHSIEKPKT VVYCRHYIAG RCHEGDKCKF SHDTVPLTKS KPCCYFSRQS CMKGDDCPFD 600 HQLSKYPCDN FVNNGSCIRG DRCLFSHKIL SKEESATAAS KPELVSPTVL GNSRSAQVKI 660 GSPSQKNSHA LLHSTGTHSH NNTELIMART LLEQPAMATK GFSFLSTGKS SLVHSSMSKQ 720 GVLAPDRSTG AKAGNPMQQS PSSFVPNTKE NIMTTPPVVT PKGINFLSFG KASPDGSSGK 780 NQDHHHSNRS VSETVQNFNG VPKVIQPAQP KAADFLSVAN SSSGNPFSLT SSSDNSRHFG 840 EGKSAFDKPQ NSSAISSRLQ PSPLTSGQSS DYTASRFKDP RNQRSLFSTL AFAEKYESKK 900 TNQSIGSTFS QVDRETKQND SGKAFNILDF LSTIGSTTK

Sequence ? help Back to Top

Protein Sequence Length: 939 aa Download sequence

MEEPQFEKEK PSETLISLPP HRRRSLKSET HRTLLRILSH CYDVLQHPDQ NVPPELNQDN  60
GSNELGETTA KEGGRNVELV EPDSRKCDDS AAQQELVAVE RCDGKGLRER IGQIEDFFSE  120
EGNEELSGQM DFEDTFGINF GDLEFGPEEM LMDELEQIVK GNDDNAPKLS TGSLVENEGA  180
NDKVELLSNQ EQRDDSQHNA TVRPENADQV VIGEIHNEGE CNECSHSLLK TSSLDVEPII  240
QQKAMETSVS SGSAEVSLIP ITEVAQFEVP EHFSQKVPEA FVFPLDTDMV GDASKPSQSK  300
SWSHKADDLE GEHEIQPNEN KMEMVCTGNA VNCPNHMNDG DMEEGEISDD DGMDDRSTNM  360
LLHDTARCEE NKVNEFQIVK DVNGQKEHSG KEAIGREFDS NSFLMSIADN VQNPRGVELR  420
ESKTKLIGRP GVVQGKTMEA IKENGYDPSL ESRRIEEKDS GIGRGIGFQE ACTNNQASHE  480
KISQNYEAGS CGTSSEDKVD AGAANKRRRG PPSKEKKQRK KAKERLKRAE MNRKLGVKRL  540
KLHSIEKPKT VVYCRHYIAG RCHEGDKCKF SHDTVPLTKS KPCCYFSRQS CMKGDDCPFD  600
HQLSKYPCDN FVNNGSCIRG DRCLFSHKIL SKEESATAAS KPELVSPTVL GNSRSAQVKI  660
GSPSQKNSHA LLHSTGTHSH NNTELIMART LLEQPAMATK GFSFLSTGKS SLVHSSMSKQ  720
GVLAPDRSTG AKAGNPMQQS PSSFVPNTKE NIMTTPPVVT PKGINFLSFG KASPDGSSGK  780
NQDHHHSNRS VSETVQNFNG VPKVIQPAQP KAADFLSVAN SSSGNPFSLT SSSDNSRHFG  840
EGKSAFDKPQ NSSAISSRLQ PSPLTSGQSS DYTASRFKDP RNQRSLFSTL AFAEKYESKK  900
TNQSIGSTFS QVDRETKQND SGKAFNILDF LSTIGSTTK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	516	527	KKQRKKAKERLK
2	519	541	RKKAKERLKRAEMNRKLGVKRLK