PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0459501
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 170aa    MW: 19068.5 Da    PI: 9.6869
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0459501genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox551.4e-17767256
                            T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
                Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                             +R+ +t++q+++L+el+     + p+ e+ ++++ +l    +++ ++V++WFqN+Ra+ek
  RcHm_v2.0_Chr3g0459501  7 NTRWLPTTDQIRILKELYDDkgVKSPTVEQVQRITLQLkwygQIENKNVFYWFQNQRAREK 67
                            58*****************6579*************************************9 PP
2Wus_type_Homeobox98.16.9e-32670265
       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                            ++tRW Pt++Qi+iL+ely+ +G+++P+ e++qrit +L+ yG+ie+kNVfyWFQN++aRe+ k+
  RcHm_v2.0_Chr3g0459501  6 SNTRWLPTTDQIRILKELYDdKGVKSPTVEQVQRITLQLKWYGQIENKNVFYWFQNQRAREKLKK 70
                            789****************999****************************************885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    
MHCKQSNTRW LPTTDQIRIL KELYDDKGVK SPTVEQVQRI TLQLKWYGQI ENKNVFYWFQ  60
NQRAREKLKK KNLTSDVQVP KQRSGLVGGS INLNFGSTSS ADVGGSIMEQ RGEDHQEVKT  120
LPLFPMHSED IFGNMKTTSD GGGGHGGGSY ISLELSLSCE GKAGKSFWSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-28WOX family protein