PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0460751
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Nin-like
Protein Properties Length: 192aa    MW: 22141.2 Da    PI: 5.4394
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0460751genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK79.43.9e-2575125252
                  RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                              k +s+e++s+yF++pi+ AA e++v++T+LK++CR++GI+RWP Rk++s+
  RcHm_v2.0_Chr3g0460751  75 AKMLSQETISEYFYMPITRAAEEMNVSVTTLKKRCRELGIHRWPCRKLNSV 125
                             5789*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MYVLPLAFTM FLSGSEYVPS EWEDELLLTD DTFLGDGFGV GIDGDEGMSN NLNTTSCNTE  60
DRSGIASSSS KPSKAKMLSQ ETISEYFYMP ITRAAEEMNV SVTTLKKRCR ELGIHRWPCR  120
KLNSVKNLEE SIQISYMQEF GKKEEELEFL EKERKMIEQV PDLQLEEKTK RLRHAYFKAK  180
SCGNYSMHRR CK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.14e-28Nin-like family protein