PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0461411
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 231aa    MW: 25297.9 Da    PI: 4.798
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0461411genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.34.1e-1648107457
                             -SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox   4 RttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                             R+t+t+ ql++L+ l++   +++p+ e+++e+  +l    ++++++V++WFqN +a++++
  RcHm_v2.0_Chr3g0461411  48 RWTPTPAQLRILQGLYYDkgHKNPTPEQIQEICLHLkpygQIEDKNVFFWFQNLKARDRQ 107
                             9***************9557*************************************996 PP
2Wus_type_Homeobox95.25.4e-3146108364
       Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                             + RWtPtp Q++iL+ ly+ +G ++P+ e+iq+i  +L+ yG+iedkNVf+WFQN kaR+rqk
  RcHm_v2.0_Chr3g0461411  46 TIRWTPTPAQLRILQGLYYdKGHKNPTPEQIQEICLHLKPYGQIEDKNVFFWFQNLKARDRQK 108
                             67***************9889*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MEPRTLQLME LQTQQQTELQ AQQLTEEGGS NQVAGSSANT PIRPTTIRWT PTPAQLRILQ  60
GLYYDKGHKN PTPEQIQEIC LHLKPYGQIE DKNVFFWFQN LKARDRQKLK EFRKVRVGGS  120
LDLNFGSTSS TDGGRSIDLN FGSTDSTGDD GSIDLTLGLR SFMEQRGGDH QEVETLPLFP  180
EHGENIIGNP KTTSEGGSSF GYYSGVSGGY NSGSPVSLEL SLNPSGATDL A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-15WOX family protein