PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0461691

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

ERF

Protein Properties

Length: 597aa MW: 68144 Da PI: 4.3043

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0461691	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.3	3.9e-18	68	127	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpse..ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+Wv+eIr+p+ g ++ r +lg+f+ta eAa a+++a+k+++g RcHm_v2.0_Chr3g0461691 68 CSYRGVRQRI-WGKWVSEIRVPNAntHGltsRKvGRLWLGTFDTAVEAAHAYDKAAKAMYG 127 67***998.******8664555986558**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence
MTPKSSDGDR KMGKRPRLDE TVVKWEKYSK NFDFAKDGLV NRMPRRMPTV GARKGRMRGK 60 GGPENLNCSY RGVRQRIWGK WVSEIRVPNA NTHGLTSRKV GRLWLGTFDT AVEAAHAYDK 120 AAKAMYGPVA WLNFPESLET SMSDETTESC DNASEFEDGV GEEPKQEDEV FDATVKEPSN 180 EWHREANSIK CQLQMEDELV NNDVEVEELA INNVRESVDE WHSEPKYVKC ELQTEDEFVE 240 HDVEVEALAM NNVREPEDVW PREPKYVKCE LEKEDQLVTN DVEVEAVTAN NVREYEDVWQ 300 WEPKYVKCDL EAQDELLQSK AEVERLAMNN VTEEEFQAVS YVGSSNHRHD NHLDNYLQVG 360 KFDSVPSGTP YTNLDFPDIF LRYSNDYLDA ELVDVKCNPK NDCNPSNDVT VDTSVMSKPM 420 EKEFALILES GDNNLHNEPI NVASNNLVTN LGEYEKTVLP PNEFQGDIAE TMKPNGHNGF 480 GDNNACLQEH DERINVAYSP RSGIKPSTDI ETQKEIDSKL GDLHSWSLDK TYGIELHNLP 540 NQLQIADGLY GSFNYKEEEC LGVDFNLDWS RQNYFSGEFE ESALPDSWFP YYHGGSS

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence

MTPKSSDGDR KMGKRPRLDE TVVKWEKYSK NFDFAKDGLV NRMPRRMPTV GARKGRMRGK  60
GGPENLNCSY RGVRQRIWGK WVSEIRVPNA NTHGLTSRKV GRLWLGTFDT AVEAAHAYDK  120
AAKAMYGPVA WLNFPESLET SMSDETTESC DNASEFEDGV GEEPKQEDEV FDATVKEPSN  180
EWHREANSIK CQLQMEDELV NNDVEVEELA INNVRESVDE WHSEPKYVKC ELQTEDEFVE  240
HDVEVEALAM NNVREPEDVW PREPKYVKCE LEKEDQLVTN DVEVEAVTAN NVREYEDVWQ  300
WEPKYVKCDL EAQDELLQSK AEVERLAMNN VTEEEFQAVS YVGSSNHRHD NHLDNYLQVG  360
KFDSVPSGTP YTNLDFPDIF LRYSNDYLDA ELVDVKCNPK NDCNPSNDVT VDTSVMSKPM  420
EKEFALILES GDNNLHNEPI NVASNNLVTN LGEYEKTVLP PNEFQGDIAE TMKPNGHNGF  480
GDNNACLQEH DERINVAYSP RSGIKPSTDI ETQKEIDSKL GDLHSWSLDK TYGIELHNLP  540
NQLQIADGLY GSFNYKEEEC LGVDFNLDWS RQNYFSGEFE ESALPDSWFP YYHGGSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05410.2	3e-22	ERF family protein