PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0462311

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

G2-like

Protein Properties

Length: 348aa MW: 39315.6 Da PI: 7.9776

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0462311	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103	1.8e-32	68	121	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+ RcHm_v2.0_Chr3g0462311 68 PRLRWTPDLHLRFVHAVERLGGQDRATPKMVLQLMNIKGLSIAHVKSHLQMYRS 121 8****************************************************7 PP
2	Myb_DNA-binding	52.7	9.7e-17	69	120	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+++++++v+av++lGg t+k + + m+ kg++ ++ks++q+y+ RcHm_v2.0_Chr3g0462311 69 RLRWTPDLHLRFVHAVERLGGQdraTPKMVLQLMNiKGLSIAHVKSHLQMYR 120 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MEGMSGESEC SKTSPSDDRN EEGSESGENH DGEISKPKNN GGSSSNSTVE ESDQKKGSVR 60 PYVRSKMPRL RWTPDLHLRF VHAVERLGGQ DRATPKMVLQ LMNIKGLSIA HVKSHLQMYR 120 SKKIDDAGQV IADQGHHLAE CGDKNIYNLS QLPMLQGYNR SHMSTSFRYG YGDANSWSNS 180 AYENLRHPRI FQGTMTEKLF GSSTTTSNWN STAYSNFRTS SEQVPTWITH TLKDECNQLY 240 NIRRQSLQAH QTRQSLIDHL NPTTHVQPKE KDHFTSLSST PTNLQELKTL KRKASDCDLD 300 LDLSLRLTTK KNDESPRSTT MRDDEVDCTS LSLSLYSPAS AKIRRVEE

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MEGMSGESEC SKTSPSDDRN EEGSESGENH DGEISKPKNN GGSSSNSTVE ESDQKKGSVR  60
PYVRSKMPRL RWTPDLHLRF VHAVERLGGQ DRATPKMVLQ LMNIKGLSIA HVKSHLQMYR  120
SKKIDDAGQV IADQGHHLAE CGDKNIYNLS QLPMLQGYNR SHMSTSFRYG YGDANSWSNS  180
AYENLRHPRI FQGTMTEKLF GSSTTTSNWN STAYSNFRTS SEQVPTWITH TLKDECNQLY  240
NIRRQSLQAH QTRQSLIDHL NPTTHVQPKE KDHFTSLSST PTNLQELKTL KRKASDCDLD  300
LDLSLRLTTK KNDESPRSTT MRDDEVDCTS LSLSLYSPAS AKIRRVEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-60	G2-like family protein