PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0465501
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 310aa    MW: 34559.6 Da    PI: 8.7384
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0465501genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000225779123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y+C+ C + F++   L  H+++H
  RcHm_v2.0_Chr3g0465501 57 YSCSFCRREFRSAQALGGHMNVH 79
                            99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MEQARYWMWA KRKHSSLMSA SHEVQVPSHD ESSWEEQAFA EDAAGPLGGC IWPPRSYSCS  60
FCRREFRSAQ ALGGHMNVHR RDRARLKQSP NNDQNVETAH HHQNHQDISV QINPFSSSLG  120
TFHQYPSHHQ VCALVYNPNN PSSDPPSSPS RVSTQLPGKD QNCGQEKITL NIPTSRSSSV  180
SSPPSRSILT ANRYYNNSVA RKTEAAEKIS RIVESGPCRA NKGADYVTAD LSVSLNLVVR  240
CARPSVSAGG DENEAIISCK RRKIMEEKQS SKDSLPLFLK SEGFEVLSRP SSIEELDLEL  300
RLGHRPKVIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-33C2H2 family protein