PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0467501
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 115aa    MW: 12258 Da    PI: 8.5049
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0467501genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-052345123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C++Cg  Fs+   L  H+r+H
  RcHm_v2.0_Chr3g0467501 23 HECSICGLEFSSGQALGGHMRRH 45
                            79********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    
MGSDQDPKIE TESGKGKTKK KKHECSICGL EFSSGQALGG HMRRHRMTNA GCSSPVPAAA  60
AVAGASKIPG LMRSNSKSVM FLDMDLNLTP LENDLKLLFG NWEYGMAPNA DTSIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-15C2H2 family protein