PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0467521

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 199aa MW: 22418.1 Da PI: 10.2657

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0467521	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.6	0.0018	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H RcHm_v2.0_Chr3g0467521 60 FECKTCNRQFPSFQALGGHRASH 82 89**********99999998887 PP
2	zf-C2H2	17.7	9.9e-06	109	131	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs+ L H+r+H RcHm_v2.0_Chr3g0467521 109 HECSICGREFSSGQALGGHMRRH 131 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence
MKSFVYLHSA YYLFAPSAYI AMKRTREEVV GVDMDKVLML LSCRLETKFK RYSSTPNDVF 60 ECKTCNRQFP SFQALGGHRA SHKKPRTLMG SDQDPKSENK MAQSKPKKHE CSICGREFSS 120 GQALGGHMRR HRTVNARFSA TIPAGASVDG ASKMKIPMLM RSNSKRLMCL DMDLNLTPLE 180 NELKLLFGNM APKIDTLIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53600.1	1e-38	C2H2 family protein