PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0468481

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

AP2

Protein Properties

Length: 342aa MW: 38250.6 Da PI: 7.1787

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0468481	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.9	2.2e-17	126	175	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g RcHm_v2.0_Chr3g0468481 126 SQYRGVTFYRRTGRWESHIWD------NgKQVYLGGFDTAHSAARAYDRAAIKFRG 175 78*****************......44**********************998 PP
2	AP2	44.4	4e-14	218	268	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ k +g RcHm_v2.0_Chr3g0468481 218 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDQAAIKCHG 268 89******.7**...5...334336******99*********9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MLDLNLNFYT PEMETSAASS FNDSSNDSSS SATLNFLDLQ NDVAAPPYDD ADHHDYFDGR 60 TIQLFPPQPQ PPLRSSTTKQ WLGLSSGGAP QRYSAPPPPP PLAEQRIVPL PEKVKKSRRG 120 PRSRSSQYRG VTFYRRTGRW ESHIWDNGKQ VYLGGFDTAH SAARAYDRAA IKFRGTEADI 180 NFNVSDYDED IKQMSKFTKE EFVHILRRQS TGFARGSSKY RGVTLHKCGR WEARMGQLLG 240 KKYIYLGLFD SEIEAARAYD QAAIKCHGRE AVTNFNPSLY DGEIMAEANN AGIDDSLDLN 300 LGIAPPLASD CPNENINLSS FPFQLGCNDN PVNMTARVFR SK

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MLDLNLNFYT PEMETSAASS FNDSSNDSSS SATLNFLDLQ NDVAAPPYDD ADHHDYFDGR  60
TIQLFPPQPQ PPLRSSTTKQ WLGLSSGGAP QRYSAPPPPP PLAEQRIVPL PEKVKKSRRG  120
PRSRSSQYRG VTFYRRTGRW ESHIWDNGKQ VYLGGFDTAH SAARAYDRAA IKFRGTEADI  180
NFNVSDYDED IKQMSKFTKE EFVHILRRQS TGFARGSSKY RGVTLHKCGR WEARMGQLLG  240
KKYIYLGLFD SEIEAARAYD QAAIKCHGRE AVTNFNPSLY DGEIMAEANN AGIDDSLDLN  300
LGIAPPLASD CPNENINLSS FPFQLGCNDN PVNMTARVFR SK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	2e-94	AP2 family protein