PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0468661
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YB
Protein Properties Length: 173aa    MW: 18711.8 Da    PI: 6.2725
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0468661genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB187.59.3e-5926123198
                   NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                             vreqdr+lPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plkvyl
  RcHm_v2.0_Chr3g0468661  26 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYL 112
                             69************************************************************************************* PP

                   NF-YB  88 kkyrelegekk 98 
                             +kyre+eg++k
  RcHm_v2.0_Chr3g0468661 113 AKYREMEGDTK 123
                             ********975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MAEGPASPGG GGSHDSGGEH SPRSNVREQD RYLPIANISR IMKKALPANG KIAKDAKETV  60
QECVSEFISF ITSEASDKCQ REKRKTINGD DLLWAMATLG FEDYIDPLKV YLAKYREMEG  120
DTKGSGKGGE SSSKKEVQPS SIAQISHQGS FSQGASYSNS QTQQMMVPMQ GSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.18e-79NF-YB family protein