PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0469111
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family S1Fa-like
Protein Properties Length: 80aa    MW: 8674.32 Da    PI: 10.608
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0469111genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA125.91.2e-391680670
                    S1FA  6 veakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                            + +kG+nPGlivllvv gll++flvgny+lyvyaq+++PP+kkkPvskkklk+e+lkqGv++PGe
  RcHm_v2.0_Chr3g0469111 16 AGTKGFNPGLIVLLVVVGLLVTFLVGNYALYVYAQRTIPPKKKKPVSKKKLKKERLKQGVSAPGE 80
                            567*************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    
MADDFSDKVP PSFDAAGTKG FNPGLIVLLV VVGLLVTFLV GNYALYVYAQ RTIPPKKKKP  60
VSKKKLKKER LKQGVSAPGE