PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0469371
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 162aa    MW: 18627.3 Da    PI: 9.4847
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0469371genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.73.3e-51151421128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lp+GfrFhP+deel+v+yLk+kv++++l++ ++i+e+d+yk++Pw+Lp k+  +e+ewyfF++rd+ky++g+r+nra+  gyWkatg
  RcHm_v2.0_Chr3g0469371  15 LPAGFRFHPSDEELIVHYLKNKVTSSPLPA-TIITELDLYKYNPWELPPKALFGEEEWYFFTPRDRKYPNGTRPNRAAGLGYWKATG 100
                             799***************************.89**************96666789******************************** PP

                     NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             +dk+++s+ +++ +g+kk Lvfy+g+ pkg+kt+W+m+eyrl
  RcHm_v2.0_Chr3g0469371 101 TDKHIFSScGTKSIGVKKALVFYTGHPPKGVKTEWIMNEYRL 142
                             *******988889***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
MAEMEQTIEN HNIQLPAGFR FHPSDEELIV HYLKNKVTSS PLPATIITEL DLYKYNPWEL  60
PPKALFGEEE WYFFTPRDRK YPNGTRPNRA AGLGYWKATG TDKHIFSSCG TKSIGVKKAL  120
VFYTGHPPKG VKTEWIMNEY RLLDTTIWST TSKQKGSMRV SI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-71NAC family protein