PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0469381

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 462aa MW: 50507.8 Da PI: 9.9019

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0469381	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	64	86	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H RcHm_v2.0_Chr3g0469381 64 FICEICNKGFQRDQNLQLHRRGH 86 89*******************88 PP
2	zf-C2H2	12.9	0.00034	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ RcHm_v2.0_Chr3g0469381 141 WKCEKCSKKYAVQSDWKAHSKTC 163 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MMSGDGYSLI PSAMEGFDHQ LNPANPSQKS NPVVKKKRNL PGTPDPDAEV IALSPTTLMA 60 TNRFICEICN KGFQRDQNLQ LHRRGHNLPW KLRQRTNKDV IKKKVYICPE KTCVHHDPSR 120 ALGDLTGIKK HFSRKHGEKK WKCEKCSKKY AVQSDWKAHS KTCGTREYKC DCGTLFSRKD 180 SFITHRAFCD ALTEESARLT SAAAAATNLN FGNDPTVNNT MINSQAVQDV SQISDFDKPS 240 RLSFWLNQQP NNLNVMDMAV ANPNNLYEMV HMGSATSLFG SNSMSNFGAS TSTSSANLSL 300 SSPIGIKDQE RRNIKANIIS KPPAAPMSAT ALLQKAAQLG STRSSNQPLS GSSVGVMTSP 360 SSSNTMSFNS RSNELNQLFQ SSTTTSSNLV SSLSCSSNSL EQVMKFGGAN SNAIDHQNSL 420 TRDFLGVGDR QIHNRQFLPH ELAKFGSMSS AAMGLSPFTG NH

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MMSGDGYSLI PSAMEGFDHQ LNPANPSQKS NPVVKKKRNL PGTPDPDAEV IALSPTTLMA  60
TNRFICEICN KGFQRDQNLQ LHRRGHNLPW KLRQRTNKDV IKKKVYICPE KTCVHHDPSR  120
ALGDLTGIKK HFSRKHGEKK WKCEKCSKKY AVQSDWKAHS KTCGTREYKC DCGTLFSRKD  180
SFITHRAFCD ALTEESARLT SAAAAATNLN FGNDPTVNNT MINSQAVQDV SQISDFDKPS  240
RLSFWLNQQP NNLNVMDMAV ANPNNLYEMV HMGSATSLFG SNSMSNFGAS TSTSSANLSL  300
SSPIGIKDQE RRNIKANIIS KPPAAPMSAT ALLQKAAQLG STRSSNQPLS GSSVGVMTSP  360
SSSNTMSFNS RSNELNQLFQ SSTTTSSNLV SSLSCSSNSL EQVMKFGGAN SNAIDHQNSL  420
TRDFLGVGDR QIHNRQFLPH ELAKFGSMSS AAMGLSPFTG NH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	2e-99	C2H2 family protein