PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0470021

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 249aa MW: 26700.6 Da PI: 7.7366

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0470021	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116	4.8e-36	69	188	4	105
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg 88 + ++++hTkv+gR+RRvR++a caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tgt++ +a+ c +++ s s+ s + RcHm_v2.0_Chr3g0470021 69 RSANTKDRHTKVNGRGRRVRMPAMCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGTGTHPAQLCtsTPAISASMP---SLH 152 67789*********************************************************9999977743222222222...222 PP TCP 89 ..................kaaksaa.kskksqksaa 105 + ++++ +++++q++ + RcHm_v2.0_Chr3g0470021 153 crptistvnttgaagqlvYHLQQHPvSQSHQQQQLS 188 334455555555566666444444445555555554 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MGSEMALQDY LSPDPPHHHH HQLPTLKRED PTQNVAVPAA VLTSTTTVTT VTTAEDSART 60 TQQLSRTRRS ANTKDRHTKV NGRGRRVRMP AMCAARIFQL TRELGHRSDG ETIEWLLRHA 120 EPSIIAATGT GTHPAQLCTS TPAISASMPS LHCRPTISTV NTTGAAGQLV YHLQQHPVSQ 180 SHQQQQLSCR LDLCQPLPGL DYSAVAGNNN GGYQNSHGYN HHGFTALLLQ SGVGDGGDAA 240 SGEGSQGLD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	7e-36	TCP family protein