PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0470081
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 209aa    MW: 23264.6 Da    PI: 4.8671
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0470081genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.46e-142283357
                            --SS--HHHHHHHHHHHHH..SSS--HHH.HHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFek..nrypsaee.reeLAkkl....gLterqVkvWFqNrRakekk 57
                            +R+++t+ ql++L+ l++    +yp+ e+ ++e+  +l    ++++++V++WFqN +a+e++
  RcHm_v2.0_Chr3g0470081 22 NRWAPTPPQLRILKGLYYDkgFKYPTPEQmIQEICLHLkqygQIEDKNVFFWFQNLKARERQ 83
                            7****************96568***9765389****************************97 PP
2Wus_type_Homeobox894.7e-292184364
       Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkee.iqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                            ++RW+Ptp Q++iL+ ly+ +G + P+ e+ iq+i  +L++yG+iedkNVf+WFQN kaRerqk
  RcHm_v2.0_Chr3g0470081 21 NNRWAPTPPQLRILKGLYYdKGFKYPTPEQmIQEICLHLKQYGQIEDKNVFFWFQNLKARERQK 84
                            78***************9889*****977659*******************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MEQQTQQQIE DGGNNQTAGT NNRWAPTPPQ LRILKGLYYD KGFKYPTPEQ MIQEICLHLK  60
QYGQIEDKNV FFWFQNLKAR ERQKLKEFRN VPVGGSLDLN FGSTSSTDDS RSIDLNFGSR  120
VGYGVDPYSS SPFNTNTSTA SFGTTGGQSF MEQRGGDHQE IETLPLFPMH GEDIFGNMKT  180
TSKGGSGYGG DSRISLELSL NSYGDADMV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-20WOX family protein