PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0470831

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 313aa MW: 34392.6 Da PI: 6.5955

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0470831	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0015	138	160	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H RcHm_v2.0_Chr3g0470831 138 YECKTCNRCFSSFQALGGHRASH 160 99**********99999998887 PP
2	zf-C2H2	13	0.00032	220	242	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg Fs+ L H+r+H RcHm_v2.0_Chr3g0470831 220 HECSVCGAEFSSGQALGGHMRRH 242 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence
MMMMMMEAAN LEEDQNQMMI IKGKRTKRPR LSSPIVLTTT ASSSSSPGGG DDVEDHHHQL 60 GMISTPIRVS DQDDETTASP ATSAEFTEMS TTEEEEDMAN CLILLAQSGQ TQIRKVQEQQ 120 QPIKAVAAAD TAPGLYVYEC KTCNRCFSSF QALGGHRASH KKPKASNVIN TTQAQPKKEL 180 SCMEDQDEYD RRFNNNTTST TLSLQISNRG FGNSKGNKVH ECSVCGAEFS SGQALGGHMR 240 RHRTSMNSTT TAQTLSSPQP QAPNKRPRSV LELDLNLPAP EEERLEMTKL PFSSSKKEQV 300 IVFSASPLVG CHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	8e-48	C2H2 family protein