PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0471331

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 562aa MW: 63123.9 Da PI: 5.5111

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0471331	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	139.1	2.8e-43	17	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkat 86 lppG+rF+Ptd el+ +yL++k+ +++l+ + i++++iy+++P++L k+++ +e+ wyfFskrd+ky +g+r+nra++ g+Wkat RcHm_v2.0_Chr3g0471331 17 LPPGYRFNPTDGELILNYLNRKILNQPLPR-NRIHDINIYQYHPQELSKMFDIiREDGWYFFSKRDRKYLNGTRPNRAARGGRWKAT 102 79************************99.77**********9655544778************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g++ ++++++gel+g kk+L f kgr+++ kt+W mheyr+ RcHm_v2.0_Chr3g0471331 103 GSEVNIIDENGELIGHKKVLEFKKGRHKQDIKTEWKMHEYRI 144 **************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MEGNSQEMSA DEYFRSLPPG YRFNPTDGEL ILNYLNRKIL NQPLPRNRIH DINIYQYHPQ 60 ELSKMFDIIR EDGWYFFSKR DRKYLNGTRP NRAARGGRWK ATGSEVNIID ENGELIGHKK 120 VLEFKKGRHK QDIKTEWKMH EYRIKDEKED IPRPKRKKGE GNMQLDTVLC KIYLNTRGNG 180 NTDEKDAVTT ETSDQGIMVT DAGTSHDNDI SVLKQGVGQV QPLDSLLMMS SMQPQVHNNT 240 TGGFNNVDRI PNSSTIPDCF YSSTSMNNGI MVTDTVTSHD KDISVLEHGP GQLQPLGSSL 300 MCSLQPQVHT IGGFKNMDHI SNSSTVPNIC FYSSNSMNGN MVTDTVTFHD KDISVLKQGA 360 GQVQPLGSSL MCSLQPQVHN NTTGGFNNMY HISNSSTIPD NCFYSSTPMS NGVCDSTQCT 420 HHGGSMTNGA SGSGYRWGSF THLHHQNYKN YSMSSEQMPS SSTWYPSEHP LQYPTEIWTQ 480 SEPENHEMPQ VDDSTSVSLP ARYIEYESML VNKEEADIMP VQHANKDEAD DDGLQFLSIP 540 DEVHKNDSKL ASFDDEINSG LD

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MEGNSQEMSA DEYFRSLPPG YRFNPTDGEL ILNYLNRKIL NQPLPRNRIH DINIYQYHPQ  60
ELSKMFDIIR EDGWYFFSKR DRKYLNGTRP NRAARGGRWK ATGSEVNIID ENGELIGHKK  120
VLEFKKGRHK QDIKTEWKMH EYRIKDEKED IPRPKRKKGE GNMQLDTVLC KIYLNTRGNG  180
NTDEKDAVTT ETSDQGIMVT DAGTSHDNDI SVLKQGVGQV QPLDSLLMMS SMQPQVHNNT  240
TGGFNNVDRI PNSSTIPDCF YSSTSMNNGI MVTDTVTSHD KDISVLEHGP GQLQPLGSSL  300
MCSLQPQVHT IGGFKNMDHI SNSSTVPNIC FYSSNSMNGN MVTDTVTFHD KDISVLKQGA  360
GQVQPLGSSL MCSLQPQVHN NTTGGFNNMY HISNSSTIPD NCFYSSTPMS NGVCDSTQCT  420
HHGGSMTNGA SGSGYRWGSF THLHHQNYKN YSMSSEQMPS SSTWYPSEHP LQYPTEIWTQ  480
SEPENHEMPQ VDDSTSVSLP ARYIEYESML VNKEEADIMP VQHANKDEAD DDGLQFLSIP  540
DEVHKNDSKL ASFDDEINSG LD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	3e-42	NAC family protein