PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0472131
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HSF
Protein Properties Length: 133aa    MW: 14478.5 Da    PI: 4.2924
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0472131genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind75.49.7e-2464122260
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 
                             Fl+k++++++d++l+ +isw ++g+sfvv+d+ ef++ +Lp+ Fkhsnf+SFvRQLn+Y
  RcHm_v2.0_Chr3g0472131  64 FLSKTFDLVDDPSLDLIISWGSTGRSFVVWDPVEFSRLILPRNFKHSNFSSFVRQLNTY 122
                             9*********************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    
MYPRDDERFP KPPTSISGQL DPEMPEPLLG GVAMDIEGMS GGSSDCVGVP QPLQCLQGTP  60
VPPFLSKTFD LVDDPSLDLI ISWGSTGRSF VVWDPVEFSR LILPRNFKHS NFSSFVRQLN  120
TYVGICSSTA SIG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.18e-39HSF family protein