PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0472281
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 205aa    MW: 21867.3 Da    PI: 6.3919
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0472281genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-173988255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                             y+GVr+++ +g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  RcHm_v2.0_Chr3g0472281 39 TYRGVRRRS-SGKWVSEIREPK----KpNRIWLGTFSTPEMAAVAYDVAALALKG 88
                            69****888.8*********94....468***********************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MACLIVLCFH RSTTHTMQYT TNSSESSSSS STGPGRHPTY RGVRRRSSGK WVSEIREPKK  60
PNRIWLGTFS TPEMAAVAYD VAALALKGQD AELNFPNSAS SLPVPASNSS RDIQAAATSA  120
AAAIGAAAAA MGVGNGATST RPSTESGHGH VLNDHEFIDE DLIFDMPNVL RNMAEGMLLS  180
PPRLDIAGDY DAFAAEEHGN LWKFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.16e-46ERF family protein