PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0476401
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YA
Protein Properties Length: 306aa    MW: 33824.2 Da    PI: 9.9184
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0476401genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA95.56.2e-30149204258
               CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                              p+YVNaKQy++I++RRq+Rak+  e++  +++rkpy+heSRh hA+rRpRg+gGrF
  RcHm_v2.0_Chr3g0476401 149 GPIYVNAKQYHGIIRRRQSRAKAVMENRA-ARHRKPYMHESRHLHAMRRPRGCGGRF 204
                             69***************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MAMQTVYFKE HEGLGQLSSV LPWWGTAFGS QQVHGESCGQ SKPFTMELPN SGDQLTAPKQ  60
PGRGTEQGLD KGNTNQFTIF PGDGKKSQPA ISLQSSPPKY RGHFELGFSQ PMICGKYPYM  120
DQCYGLFSTY GPQVPGRIML PLNLTTDEGP IYVNAKQYHG IIRRRQSRAK AVMENRAARH  180
RKPYMHESRH LHAMRRPRGC GGRFLNTKTA NNGIGRNEIK LVGDVQLFRH SGSQSSEVLQ  240
SESGTLNSSK SNGSSSNISG SEVTSMYSRG DPFSMNHHHL GPSVHYGMVM PTKWIAAVDN  300
CCNLKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.15e-57NF-YA family protein