PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0477441
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 194aa    MW: 22299.2 Da    PI: 8.6792
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0477441genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.47.6e-181561147
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                            k+i n   r+vtfskRr g+ KK +EL +LC+aev v++fs++ k +
  RcHm_v2.0_Chr3g0477441 15 KKIANADDRHVTFSKRRSGVYKKCNELATLCGAEVGVVVFSESEKPF 61
                            6899**************************************98855 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
MEGRKTRGRQ KIEIKKIANA DDRHVTFSKR RSGVYKKCNE LATLCGAEVG VVVFSESEKP  60
FSYGNPSIDS IADRFLNLQP PQENSDDRIA GSLVGAYKHA RYMEILNKHN ELEDKLRDEQ  120
LREKVLLQKE RARASAEQEG LGWWQRPIKE LDSEELKQMY ASFQHLHNSL SNHLVLLNVA  180
THNVNNNNNI INMQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.15e-35M-type_MADS family protein