PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0478111

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 130aa MW: 15280.4 Da PI: 10.3378

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0478111	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	45.3	1.5e-14	29	90	2	57
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+ +t++ +++L+elF++ r p+ e+ +++ +l +++ ++V++WF N+Ra+ekk RcHm_v2.0_Chr3g0478111 29 CTRWIPTTDHIRILKELFYNkgVRSPTIEQTQRICLQLkwygKIEFKNVYFWFVNQRAREKK 90 58***************7789************************************8 PP
2	Wus_type_Homeobox	84.1	1.7e-27	28	92	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRW Pt++ i+iL+el++ +G+r+P+ e++qri +L+ yGkie kNV++WF N++aRe++k+ RcHm_v2.0_Chr3g0478111 28 SCTRWIPTTDHIRILKELFYnKGVRSPTIEQTQRICLQLKWYGKIEFKNVYFWFVNQRAREKKKK 92 689************98769**************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence
MEPQNQHPTE DGSNKAAGSS ANMLRRKSCT RWIPTTDHIR ILKELFYNKG VRSPTIEQTQ 60 RICLQLKWYG KIEFKNVYFW FVNQRAREKK KKRSTSDVHV PMQRSGLVGD DNVTNWKHED 120 QWGTMAVMDP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	2e-25	WOX family protein