PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0478271
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 109aa    MW: 13019.9 Da    PI: 10.4599
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0478271genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1842.4e-2611100190
                    FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHn 86 
                             +fYn+Y  + GFs+r++++ k+kr++e t+r fvC keg r++++++    r++raetrtgC a+l +k+++ ++k+ vt++++eHn
  RcHm_v2.0_Chr3g0478271  11 DFYNRYRGKKGFSIRRETHGKNKRTKELTSRLFVCCKEGIRSKDNRD-YMIRKPRAETRTGCGAQLCIKLNRrNNKFFVTHFVEEHN 96 
                             6******************************************9999.99*********************99************** PP

                    FAR1  87 Hela 90 
                             H+l+
  RcHm_v2.0_Chr3g0478271  97 HPLV 100
                             **96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    
MEFDSEQAAY DFYNRYRGKK GFSIRRETHG KNKRTKELTS RLFVCCKEGI RSKDNRDYMI  60
RKPRAETRTG CGAQLCIKLN RRNNKFFVTH FVEEHNHPLV GKEYPRSLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-20FAR1 family protein