PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0479791
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 302aa    MW: 31841.7 Da    PI: 9.3425
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0479791genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.8e-063861225
                            -S---SGGGGTS--TTTTT-SS-S CS
                 zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                            k ++C  f+ t  C++G++C+F H
  RcHm_v2.0_Chr3g0479791 38 KSKPCTKFFSTAGCPFGESCHFLH 61
                            7789******************** PP
2zf-CCCH26.21.3e-08102127227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                             kt+lC+ +     Ck+Gd+C+FaHg+
  RcHm_v2.0_Chr3g0479791 102 KTRLCNKYNSAEGCKFGDKCHFAHGE 127
                             8***********************96 PP
3zf-CCCH37.24.9e-12269293126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                             y+t+lC++fa+ GtC +G+rC+FaHg
  RcHm_v2.0_Chr3g0479791 269 YRTKLCDNFAK-GTCTFGERCHFAHG 293
                             89*********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MMDTRKRGRN EAGGFHANGG FKKNKQELDS LSTGVGSKSK PCTKFFSTAG CPFGESCHFL  60
HYVPGGYNAV AQVMNLAPPP QSSRNFAGPP SHSNGSSAPS VKTRLCNKYN SAEGCKFGDK  120
CHFAHGEREL GKPVSQSYDH DDPRAVAPAP GRMGNWMEPG HAPLQGPASS FGASSTAKIS  180
VDASLAGAII GKGGVNSKHI CHQTGAKLAI RDHESDPNLR NIELEGTFEQ IQQASALVRE  240
LIQSVLMSGP NKTPGRGGPG APAPPGSNYR TKLCDNFAKG TCTFGERCHF AHGAAELRKP  300
GV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-58C3H family protein