PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0480001
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 179aa    MW: 19917.4 Da    PI: 6.8007
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0480001genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.87.8e-08631041055
                             HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             r RR++i +++  L++l+P      +k   Ka +L + ++YI+sLq
  RcHm_v2.0_Chr3g0480001  63 RGRREKISQRMKILQDLVPGY----NKVIGKALVLDEIINYIQSLQ 104
                             89******************8....667*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    
MVSTSSANGL KYSSGKRMKL EGSRNENGNS KAEVETSSGA DDKPEEQSTK PSEPPKQDYI  60
HVRGRREKIS QRMKILQDLV PGYNKVIGKA LVLDEIINYI QSLQRQVEFL SLNIEAVNSR  120
VNMNPAIEAF PSKDVFFPSA QQFDAAALLF GPHTPREYVQ GSQAEWLHMQ VGGCLDFVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.18e-50bHLH family protein