PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0480031
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family G2-like
Protein Properties Length: 403aa    MW: 45072.1 Da    PI: 7.2228
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0480031genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.61.8e-30230284155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             k+r+rW+++LHe+Fve+v++LGG++kAtPk+il+ m+++gLt+ hvkSHLQkYR+
  RcHm_v2.0_Chr3g0480031 230 KTRIRWNQDLHEKFVECVNRLGGADKATPKAILKKMGLEGLTIFHVKSHLQKYRI 284
                             68****************************************************7 PP
2Myb_DNA-binding49.31.2e-15234283348
                             SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 
                             rW ++++e++v++v++lGg    t+k+I ++mg +g+t  ++ks++qky+
  RcHm_v2.0_Chr3g0480031 234 RWNQDLHEKFVECVNRLGGAdkaTPKAILKKMGlEGLTIFHVKSHLQKYR 283
                             9*****************99*****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    
MNEQKIDCIR SLHQPSHGLI SDPNFELGSH SSHQLLGLQQ QPWNVEVWLQ QPTMDQGVSQ  60
LQNIGPAKSP SSIMSRFESP ASAFYATERC MGFPSHYESQ VVGNPNPPQF PSGQSYEESY  120
SMESSEDIRN TLQSIVKSQT NSSQSYKSSE KSDQIPSNHL PGSKLFLHQQ MHQDSTSGSV  180
RRPFSLAFKE NQEQVSFFSQ QAKQSPRTSS GTVSATSGDS SSTSPSLSSK TRIRWNQDLH  240
EKFVECVNRL GGADKATPKA ILKKMGLEGL TIFHVKSHLQ KYRIAKYLPD SAEGKSEKRA  300
NVNVEPQLDV KTGLQIKEAL QLQLDVQRQL HEQLEIQRNL QLRIEEQGER LKKMFDLQQK  360
TSDSTLKTPN VDFTCHENGP SDNEIQVSSP EGSGNSHFPS KIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.12e-69G2-like family protein