PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0480601
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 213aa    MW: 24326 Da    PI: 7.902
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0480601genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.52.6e-1619531549
                            HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                  SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            +Rr+gi+KKA ELSvLC+a va+i+fs  gk++ y
  RcHm_v2.0_Chr3g0480601 19 RRRAGIFKKAGELSVLCGAHVAIIVFSGAGKVFCY 53
                            69*****************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MYQSPQRSIN TLLLKRRRRR RAGIFKKAGE LSVLCGAHVA IIVFSGAGKV FCYGHPNINT  60
VLESYQNGLS SVVRVNEEAG DLLVAEFNKE YVEAEKEFED LKRKATGIKQ MADEKKKMMK  120
EMNMSEGFWW DEAVDLAMMD EREWEQYFKA LEELRRKVAA RVDELKILNG TMMGPPVPAV  180
HHRLCHVPFM TSNNCFGNCQ DVQFGSGYHD LGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11520KRRRRR
21521KRRRRRR
31621RRRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-17M-type_MADS family protein