PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0480661

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 192aa MW: 21145.5 Da PI: 9.8939

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0480661	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56	6.8e-18	30	91	2	57
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t++q+++L+el+++ r p+ e+++++ +l +++ ++V++WF N++a+e++ RcHm_v2.0_Chr3g0480661 30 STRWTPTTDQIRILKELYYNkgVRSPTVEQIQRICLQLkrygKIEGKNVFYWFGNHKARERQ 91 58**************97689***********************************97 PP
2	Wus_type_Homeobox	106.5	1.7e-34	29	93	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRWtPt++Qi+iL+ely+ +G+r+P+ e+iqri +L++yGkie+kNVfyWF N+kaRerqk+ RcHm_v2.0_Chr3g0480661 29 SSTRWTPTTDQIRILKELYYnKGVRSPTVEQIQRICLQLKRYGKIEGKNVFYWFGNHKARERQKK 93 689*************9779***************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence
MEPQTQQPTE DGGSNKAAGS SANMLCRRSS TRWTPTTDQI RILKELYYNK GVRSPTVEQI 60 QRICLQLKRY GKIEGKNVFY WFGNHKARER QKKRFTSDVH VPMQRSGLVG NGNAGVIAFN 120 RQMGNYGGYG SMNMEKSFRD CSISAGGGTS STGVGGSISH NFGSWVSCSV DPYSSSSYTT 180 STSTTFFGLN EE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	8e-36	WOX family protein