PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0480891
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 404aa    MW: 44804.1 Da    PI: 5.4115
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0480891genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.64.9e-11110161155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV+++  +++W +++      gk   ++++g+f+t+e+A +a++ a+ + +g
  RcHm_v2.0_Chr3g0480891 110 SNYRGVSRNAHNKKWQVRLGK----GKDiDSIYVGTFDTEEQAGEAYDVAAIRVKG 161
                             57**************88555....2347**********************98776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    
MSATIYSTTR PVLVEVEQIL RLPNIDDPKE KANHLVTVAP CIEVLQSGFE VEEDAARAHD  60
LAALKLWGES ASLNFPLSNY VNDLEEMKSF TKKEYLLHIR SKTGLAKTVS NYRGVSRNAH  120
NKKWQVRLGK GKDIDSIYVG TFDTEEQAGE AYDVAAIRVK GPKAITNFDK SNYDVKQILE  180
SPKFLIDKGA SKTLKRSSVD DVLQKRRKTR SDSSSTPSAP PSLHLIDQTQ PTVIDSSLQY  240
QFPIPYLQVP VPHGYQNPIF EANRSFSPQY DYGGSEPIAQ LQPIIPLLNQ EFPSHQYCNS  300
NSQHHLDQTP SSQFLQDTQN PNLVAGLNNL ASDSCMEEFS SSQVHEASFE MMGTNEGGAH  360
GDGSSHVVGN LGDPVFGMGN SDLDPASWLE TFLRMSPQRL DSMV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-46AP2 family protein