PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0481001

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 377aa MW: 43098.8 Da PI: 7.0801

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0481001	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.3e-05	219	238	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ RcHm_v2.0_Chr3g0481001 219 FSCPVCFKTFNRYNNMQMHM 238 89*****************9 PP
2	zf-C2H2	14.4	0.00011	303	325	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ RcHm_v2.0_Chr3g0481001 303 FMCRKCGKAFAVRGDWRTHEKNC 325 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MAEYPYSSNF FTGLFKFNPL LHHHHHHEYP LISNPPPPPQ PQPQPQPPYA HNFFNINYNQ 60 NHNQYSSFYS SQTTHHQPPS PPLREALPLL NRLSPTKHHE DEEQEHHHHH EYYSCSTDQM 120 DVDDKISKPY NKEDHGEDDE ASVTVALHIG LPSPSAAEMA SVLSAASSSS EISTTHDKDH 180 VIGDHGDDST GYPMNRSSLN KGQYWIPTPS QILIGPTQFS CPVCFKTFNR YNNMQMHMWG 240 HGSQYRKGPE SLRGTQPTGM LRLPCYCCTP GCRNNIDHPR AKPLKDFRTL QTHYKRKHGI 300 KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY CICGSDFKHK RSLKDHIKAF GNGHAAYGID 360 GFEEDDEPAS EVEQDND

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MAEYPYSSNF FTGLFKFNPL LHHHHHHEYP LISNPPPPPQ PQPQPQPPYA HNFFNINYNQ  60
NHNQYSSFYS SQTTHHQPPS PPLREALPLL NRLSPTKHHE DEEQEHHHHH EYYSCSTDQM  120
DVDDKISKPY NKEDHGEDDE ASVTVALHIG LPSPSAAEMA SVLSAASSSS EISTTHDKDH  180
VIGDHGDDST GYPMNRSSLN KGQYWIPTPS QILIGPTQFS CPVCFKTFNR YNNMQMHMWG  240
HGSQYRKGPE SLRGTQPTGM LRLPCYCCTP GCRNNIDHPR AKPLKDFRTL QTHYKRKHGI  300
KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY CICGSDFKHK RSLKDHIKAF GNGHAAYGID  360
GFEEDDEPAS EVEQDND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-137	C2H2 family protein