PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0481251
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 349aa    MW: 39434.2 Da    PI: 6.5144
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0481251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-1991140255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  RcHm_v2.0_Chr3g0481251  91 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 140
                             69****999.**********965...5*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    
MALWTDQLSH AWTLPNVTTF KPKSLSFTTY PAPFPLMCAL PSFQIHSHSH SHSLSEFLPS  60
PSMENCRKSP LKPWKKGPTR GKGGPQNASC EYRGVRQRTW GKWVAEIREP KKRTRLWLGS  120
FATAEEAAMA YDEAARRLYG PDAFLNLPHL QPNSSNPSLK TQKFKWFPSQ NFISMFPPCG  180
MLNINAQPSV HVIHQRLQEL KQNGVYGQTT PSSSSSSCES KPEAHTTVDK TPKENVAENK  240
EKDVEITLEK VVGGREEKPQ IDLNEFLQQL GVLKRERQSE ESDTTTSFAA PESSITETSD  300
EFGPFADKNF NWDALIEMHG MEDQGAEAGT FQVYDVNEEL YFPTSIWNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.12e-82ERF family protein