PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0481371

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 720aa MW: 78316.6 Da PI: 6.3781

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0481371	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	302	322	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg RcHm_v2.0_Chr3g0481371 302 PCPDFRK-GACRRGDMCEYAHG 322 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence
MCYGSERVKP CSSSAASPII DEHFNTTMNH LTVETEDTFA SLLELAANND IESFRRSIQH 60 NPSAIDEIGL WYCRQKGSKQ MVNEHRTPLM VAATYGSNDV IKLILSLSDA DVNQTCGNDR 120 STALHCAASG GAENAVDTVR LLLAAGADPN LIDANGHRPV DVIVVPPRLQ NVRLALEQLL 180 MINGSVGEQI LSVSTRALSP PLSTSPDNGS PSALDFTCSP TKSKFYNITV SSASEKKEYP 240 VDPSLPDIKN SIYSTDEFRM YSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC 300 VPCPDFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD GTSCARRVCF FAHTAEELRP 360 LYVSTGSAVP SPRSTTSGAS AMDFAAAMSL LPGSPSSLSA MSPSPFTPPM SPSGNGMSHS 420 SVAWPQPNVP ALHLPGSNIQ SSRLRSSLCA RDMAADDFDL LPEFDMQQQQ LLNELSMSNS 480 LNRSGRLNTL TPSNLDDLFS AENLSPRYSD QALASAVFSP THKSALLNQF QQQQSMLSPI 540 HTNFSPKNTV DHPLLQAPFG APSSGRMSPR NVEPISPMGS RVSMLGQREK QQFRSLSSRE 600 LGSSSTSNIG SPANSWSKWG SSDGKPDWAV TSDELGKLRR SSSFELGNNG EEPDLSWVQS 660 LVKESPTEIK EKLTTPVSGV AATGSSNDGL SANSQMESVD HAAMGAWIDQ LHLDLVAQQN

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence

MCYGSERVKP CSSSAASPII DEHFNTTMNH LTVETEDTFA SLLELAANND IESFRRSIQH  60
NPSAIDEIGL WYCRQKGSKQ MVNEHRTPLM VAATYGSNDV IKLILSLSDA DVNQTCGNDR  120
STALHCAASG GAENAVDTVR LLLAAGADPN LIDANGHRPV DVIVVPPRLQ NVRLALEQLL  180
MINGSVGEQI LSVSTRALSP PLSTSPDNGS PSALDFTCSP TKSKFYNITV SSASEKKEYP  240
VDPSLPDIKN SIYSTDEFRM YSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC  300
VPCPDFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD GTSCARRVCF FAHTAEELRP  360
LYVSTGSAVP SPRSTTSGAS AMDFAAAMSL LPGSPSSLSA MSPSPFTPPM SPSGNGMSHS  420
SVAWPQPNVP ALHLPGSNIQ SSRLRSSLCA RDMAADDFDL LPEFDMQQQQ LLNELSMSNS  480
LNRSGRLNTL TPSNLDDLFS AENLSPRYSD QALASAVFSP THKSALLNQF QQQQSMLSPI  540
HTNFSPKNTV DHPLLQAPFG APSSGRMSPR NVEPISPMGS RVSMLGQREK QQFRSLSSRE  600
LGSSSTSNIG SPANSWSKWG SSDGKPDWAV TSDELGKLRR SSSFELGNNG EEPDLSWVQS  660
LVKESPTEIK EKLTTPVSGV AATGSSNDGL SANSQMESVD HAAMGAWIDQ LHLDLVAQQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein