PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0481481

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 172aa MW: 20501.6 Da PI: 9.7807

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0481481	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	123.6	1.7e-38	16	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkat 86 +ppGfrF Ptde l+ +yL+kk+ +++l++ + i++v+iy+++P+dL ++++ +e+ewy+F++ +ky +++r+nr++ +g+Wk RcHm_v2.0_Chr3g0481481 16 MPPGFRFVPTDEVLILCYLRKKLLNEPLPI-NRIRHVNIYQYHPRDLTAMYDLlRESEWYYFTPITRKYVNSSRPNRVAPNGFWKPR 101 79**************************.77**********8543334788************************88 PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++++++e+vg +++L fy+g+ p+g+kt W m+ey++ RcHm_v2.0_Chr3g0481481 102 MN-NPIKDRNNEVVGYRTSLEFYEGKYPNGNKTGWKMNEYTI 142 65.9**********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence
MVPVVLNETD DYFNSMPPGF RFVPTDEVLI LCYLRKKLLN EPLPINRIRH VNIYQYHPRD 60 LTAMYDLLRE SEWYYFTPIT RKYVNSSRPN RVAPNGFWKP RMNNPIKDRN NEVVGYRTSL 120 EFYEGKYPNG NKTGWKMNEY TINEAIIPPN INTNGKTRIK VPQIYIDAIF FR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	1e-36	NAC family protein