PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0481751

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 290aa MW: 31778.1 Da PI: 8.4997

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0481751	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.0003	224	246	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg Fs+ +L+ H ++ H RcHm_v2.0_Chr3g0481751 224 ECPQCGAKFSSVTTLVDHVQKvH 246 5******************9988 PP
2	zf-C2H2	16.9	1.7e-05	262	284	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+++ L+ H + H RcHm_v2.0_Chr3g0481751 262 VCPKCSKGFRDPVALVEHVERdH 284 7*****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MGTPEFPDLG KHCSVVECQQ IDFLPFTCDS CNKVFCLVHR SYIKHNCPKG DRQNVTVVIC 60 PLCAKGVHLI PDEDPNITWE RHVNTDCDPS NYEKATKKKK CPVPGCREVL TFSNTINCRD 120 CMADHCLKHR FGPDHKCPGP KKPEAGLSFM GLLSRSQKET SNRNRASATS SPNWGSFLSA 180 ASSFKASAEA SVAKLSNELS QKWTTKDGVG QSSSSGSRNR QVEECPQCGA KFSSVTTLVD 240 HVQKVHEKGG TRAGVKKLTV DVCPKCSKGF RDPVALVEHV ERDHGGTSRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-121	C2H2 family protein