PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0482191
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 251aa    MW: 28607.9 Da    PI: 8.4797
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0482191genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.11e-15994195
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                      B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                            ffkvl   d ++++ l++p+ f+++++g    +++  l+ + g+ W v+l  +  ++r+v+ +GW++F+k + L++gDf++F+ d+ s 
  RcHm_v2.0_Chr3g0482191  9 FFKVL--VDGFSQQ-LRIPRAFVKNFNGRV--PRMCGLRGPCGNLWAVNL--KEIKDRVVFHNGWQSFAKHHFLEVGDFLTFTKDDGSI 90
                            78888..7777776.********8886663..45799*************..*******************************443344 PP

                            E..EEE CS
                      B3 90 felvvk 95
                            f   v 
  RcHm_v2.0_Chr3g0482191 91 F--DVI 94
                            4..554 PP
2B344.43e-141622381494
                             T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                      B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                               l++p k + + g+   ++kt++l+d++grsW++kl  + ++++ +  +GW + +k+n++  gD++v++++++s  +l+v
  RcHm_v2.0_Chr3g0482191 162 YDLRIPSKVVIAAGLM--NNKTIMLQDPTGRSWSIKL--NETPRGQMRMEGWCNVCKENQISFGDTLVIEVVNHSVLQLHV 238
                             34999*9*99999877..5679***************..99999999999********************98878887776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MELEERPSFF KVLVDGFSQQ LRIPRAFVKN FNGRVPRMCG LRGPCGNLWA VNLKEIKDRV  60
VFHNGWQSFA KHHFLEVGDF LTFTKDDGSI FDVIIYDKSY CEKNVEAAKS RIGNVVDRTI  120
NNHIILGKRP ALDLVEETSI GSISFNSENP FFTTIFTRYT RYDLRIPSKV VIAAGLMNNK  180
TIMLQDPTGR SWSIKLNETP RGQMRMEGWC NVCKENQISF GDTLVIEVVN HSVLQLHVYK  240
VGAALDVETQ S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.18e-16B3 family protein