PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0482741
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HSF
Protein Properties Length: 241aa    MW: 27641 Da    PI: 6.3095
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0482741genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.17.7e-35221132102
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl k+y ++ed++++++isw+e+g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF +++F+k
  RcHm_v2.0_Chr3g0482741  22 FLLKTYMLVEDPATDDVISWNEDGSAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNDKFRK 99 
                             9****************************************************************999.........********** PP

                             XXXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkks 102
                             g+k++l++i+r+k 
  RcHm_v2.0_Chr3g0482741 100 GEKDHLCEIRRRKA 113
                             ***********985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MEGVCDQKGL LEYVRKSSPP PFLLKTYMLV EDPATDDVIS WNEDGSAFVV WQPAEFARDL  60
LPTLFKHSNF SSFVRQLNTY GFRKVATSRW EFCNDKFRKG EKDHLCEIRR RKAWANKQQP  120
NAALAQGQVA AEDDQSDEDH ERSSSTSSSS EYSSLIDENK RLKMENGVLS CELTSMKNKC  180
KELLDLVAKY GRDSERGKEE DDQRPKLFGV RLEVEGERER KRKRAEILSE SASILLSQAC  240
K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-60HSF family protein