PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0482951
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 355aa    MW: 38409 Da    PI: 8.4593
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0482951genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.83e-2158254128
                     NAM  54 eekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevlskkgelvglkktLvfykgrapkg.ektdWvmheyrl 128
                             +e+e  +Fs+rd+ky++gk ++r+t   +g Wka+gkd e++s++ +++g +ktLvfy+ ++++g +kt+W+mhey++
  RcHm_v2.0_Chr3g0482951   5 REEEAMYFSPRDRKYPNGKLPSRITGegDGLWKASGKDLEIFSQRWKVIGARKTLVFYDLKSKHGaKKTNWIMHEYTI 82 
                             578999*****************98856788***************************7765555279********87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    
MHKFREEEAM YFSPRDRKYP NGKLPSRITG EGDGLWKASG KDLEIFSQRW KVIGARKTLV  60
FYDLKSKHGA KKTNWIMHEY TIEENISPST STTRAPGDNR LDDWVLCKVY LSKMSKSKPN  120
TADGGKTEMT DSEPLEQDLP VLESSATPNL GEQVNVCNES AQALYNGIMT VPYGSTTGYV  180
SQEVTNLGAR SLAHHQQNLS LLPSFSQLPV INSVTSAISS IAGGDNNNGT ITTPNDGSNG  240
SEKVINLHKN LHADHQQDLP SLQNSSKPSV INSVGSAIAS LAGSPVFPDF QQVPRGFGAQ  300
HGTNIAPING IQARQSPHGI GPHQSRPSLN NGCLPPLRTF VGFLVLLGFG KVSST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.11e-26NAC family protein