PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0483031
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 77aa    MW: 8683.04 Da    PI: 10.6165
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0483031genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.58.4e-292372150
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                            k+ien s rqvtfskRr g++KKA ELSvLCdae+aviifs+tgklye s
  RcHm_v2.0_Chr3g0483031 23 KKIENLSSRQVTFSKRRSGLFKKAAELSVLCDAEIAVIIFSQTGKLYEQS 72
                            78*********************************************966 PP
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    
MLGNDTERNS QTRKMGRGKI EIKKIENLSS RQVTFSKRRS GLFKKAAELS VLCDAEIAVI  60
IFSQTGKLYE QSSTRCV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.14e-30MIKC_MADS family protein