PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0485421
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 261aa    MW: 28852.6 Da    PI: 6.4183
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0485421genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271e-0820442348
                            -HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                             W+tIa+ ++ +Rt++++k++w+++l
  RcHm_v2.0_Chr3g0485421 20 LWSTIAAQLP-KRTDNEIKNYWNTHL 44
                            5*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MVCFSLPYLR ELLHILCNIL WSTIAAQLPK RTDNEIKNYW NTHLKKRLAK IGFDPVTHKP  60
KTAILASADG GDPKKLSNLS HIAQWETARL QAEARFSRQS KLLISHDQPP RFGPVPAPQC  120
LDMNERAREI RLLLKSILAA DSGAQLGGGI GSTATHVGQE VGSFGKVDVE GLLTNCDQFE  180
APRTSTSVLG FDEVFGESGT NNDYGELLEA LLQHNHNNTG FEVGDTWTLE QRETVMMSEP  240
GTTYIWNNNN YNVLTGHPSG I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.13e-33MYB family protein