PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0485431

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 98aa MW: 11244 Da PI: 11.7777

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0485431	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.9	2e-17	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed++l v+q+ g+W++ +++ g+ R++k+c++rw++yl RcHm_v2.0_Chr3g0485431 15 RGPWTPQEDKKLFAFVQQHVHGSWRSLPQKAGLQRCGKSCRLRWRNYL 62 89*********************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence
MGRQSNAVAS PGIRRGPWTP QEDKKLFAFV QQHVHGSWRS LPQKAGLQRC GKSCRLRWRN 60 YLNPDIKRGN FSLQEDQTII LLHALLGNRQ LIAKLNLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.2	1e-43	MYB family protein