PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0491041
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 243aa    MW: 27558 Da    PI: 7.1654
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0491041genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.15.2e-17106214189
                    FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................tekerrtraetrtgCkaklkv 68 
                             kfY+ Y++ +GFs+rk+++ +  r++ +++r++vCsk+g+++ + kk                   +++  r +  +r+gC a + +
  RcHm_v2.0_Chr3g0491041 106 KFYHLYSRVIGFSTRKDRKVRAYRSEFVIRREWVCSKQGEATINAKKqglkekgktliqaekkkmkRNQCPRGKRYSRVGCMAGFGI 192
                             6*****************************************999999***********998766555556688999********** PP

                    FAR1  69 kkek.dgkwevtkleleHnHel 89 
                             +  k ++k+ v+k+ ++HnH++
  RcHm_v2.0_Chr3g0491041 193 RYCKeRKKYFVSKFITNHNHDV 214
                             **999***************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MENNEGGVCY TDHLYHSSFP SDEEVSDDDG LLQIGEDEEG FFCDGGEKGL GHTSEIGNDK  60
CHLMDMETLD GTNVSGCGDL NGKDNSNLYM DDMKDVVFSS VCEAEKFYHL YSRVIGFSTR  120
KDRKVRAYRS EFVIRREWVC SKQGEATINA KKQGLKEKGK TLIQAEKKKM KRNQCPRGKR  180
YSRVGCMAGF GIRYCKERKK YFVSKFITNH NHDVAVSEEV QFLRSHRGVT DSVIAQVEAL  240
QKA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-15FAR1 family protein