PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0492711
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 251aa    MW: 29280.9 Da    PI: 8.6859
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0492711genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-151360148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT eEd+ll ++ k +G + W++++++ g++R++k+c++rw++yl
  RcHm_v2.0_Chr3g0492711 13 KGAWTREEDDLLRHCMKTHGEEKWHRVPSKAGLNRCRKSCRLRWLNYL 60
                            79********************************************97 PP
2Myb_DNA-binding45.71.5e-1466109146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg +T++E +l+ +++k+lG++ W++Ia ++  gRt++++k++w++
  RcHm_v2.0_Chr3g0492711  66 RGGFTEDETDLIFRLHKLLGNR-WSLIAGRLS-GRTGNDVKNYWNS 109
                             788*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MDGACNNNLG VRKGAWTREE DDLLRHCMKT HGEEKWHRVP SKAGLNRCRK SCRLRWLNYL  60
KPNIKRGGFT EDETDLIFRL HKLLGNRWSL IAGRLSGRTG NDVKNYWNSR LRLDSRIKNH  120
KSPESIKTTI IRPRPRTFSK SLYPLNKRAT ILKPFQFEEN FGRSTQASPT SENEIDSPKT  180
ILDDMDSSTV ERSTSDSCRM GFEEDLFTNF WVEDMAESSR TCFSFTEGEV SNVDFCFNME  240
LWNHPKEEEK T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-58MYB family protein