PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0496241

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 246aa MW: 26941 Da PI: 8.3191

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0496241	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.3	1.2e-38	53	154	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq RcHm_v2.0_Chr3g0496241 53 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPLNRRNDAVVAISYEAQARLSDPVYGCVSTILALQQQ 139 7*********************9989******************************************************* PP DUF260 87 leqlkaelallkeel 101 +++l++ela+++++l RcHm_v2.0_Chr3g0496241 140 VASLQTELAMVQTQL 154 ********99885 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MADQPQPQGN HRGTSESCRR KATSAATGKQ QQRTAVDRHL HHHQSSSTAA SAPCGACKFL 60 RRKCISGCIF APHFGSDQGA ARFAAVHKVF GASNVSKLLL HIPLNRRNDA VVAISYEAQA 120 RLSDPVYGCV STILALQQQV ASLQTELAMV QTQLINSRFA FANAIQSSQQ HQEQQQNMAL 180 LQPAYSNNSS ASTNPINMRS FTSNFNHDLA AETAPCSHSL EPLLLSRPSQ DEEEDEQQSQ 240 VPHHFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	3e-75	LBD family protein