PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr3g0496521
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 159aa    MW: 17737.3 Da    PI: 9.2357
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr3g0496521genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.3e-08118145129
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar 29 
                             r rWT+eE+ ++++a k++    W++I +
  RcHm_v2.0_Chr3g0496521 118 RERWTEEEHNKFLEALKLHVQA-WRKIQA 145
                             78******************99.***986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    
MLLRLDGLDK KKFDGSRPSA TFSIGLRRVP ISCDVRFQPC IDIHKEQRQS RGGRGQLCLV  60
GGLMASLAMA PVQDDDDDQY GEISFSPAAV GVQLKDQLSS GNDYAPKVRK PYTITKQRER  120
WTEEEHNKFL EALKLHVQAW RKIQATPTPS PSPIAPPPP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.15e-23MYB_related family protein