PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr3g0496791

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

GeBP

Protein Properties

Length: 162aa MW: 18952.6 Da PI: 10.3369

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr3g0496791	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	53.6	6.1e-17	75	160	6	96
DUF573 6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 ws++Deiv+L Gli+f+ g + ++fye++k+++s + +q+ +K+++LK+K+ +++++ + ++ + ++ k+f+ls RcHm_v2.0_Chr3g0496791 75 TWSKDDEIVILGGLISFQ---GDEREYKSKEFYEYIKSRLS-QGDLNQVRDKVKSLKRKYMGMQNQ-TFLETFQKGRYQEMKVFNLS 156 5**************5...5445667899****98.56889**************9.566667777888999* PP DUF573 93 kkiW 96 k+ W RcHm_v2.0_Chr3g0496791 157 KIYW 160 99 PP

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence
MSNKTTEQTK KKRKKKKKKA RLAEETKQVD INGPEKENQS VDEEQDPKNK RVKVAASPAP 60 EENKSNTKSS CAGITWSKDD EIVILGGLIS FQGDEREYKS KEFYEYIKSR LSQGDLNQVR 120 DKVKSLKRKY MGMQNQTFLE TFQKGRYQEM KVFNLSKIYW VR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	10	16	KKKRKKK
2	10	18	KKKRKKKKK
3	11	17	KKKRKKK
4	11	19	KKKRKKKKK
5	11	15	KKRKK
6	12	18	KKKRKKK
7	13	19	KKKRKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	1e-10	GeBP family protein