PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0384751
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 387aa    MW: 42040.2 Da    PI: 8.0688
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0384751genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.86.7e-12427226
                            -S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                            kte+Cr+f+r G C+yGd+C++ H+
  RcHm_v2.0_Chr4g0384751  4 KTEPCRYFQR-GSCQYGDKCRYLHV 27
                            8*********.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    
MPVKTEPCRY FQRGSCQYGD KCRYLHVTQQ QPKSNIFGGS QSGSNQHQKS NPYGFGVHNN  60
SQSKAGTDKP FENKWTRSSP AAATATPSSR RSDNQPQTTN HECTNPESCR SIINEDFERE  120
RPLWKLTCYG HSRNSPCDIV GDVSYEELRA LAYDDAKRGL NLPSIIERER NVVNTKSIEF  180
ENLRKPRAVP LNSTVSQSPF ASATANAFLQ TPQSSAPPSV SSFNQFGTSL NVGFGQRPSA  240
PANNGFFQPS LFMNSSHASS GFGTNNIPSA NVGSLAGQSH NSTRGSIFTH NVGFGNTDVM  300
RPDSNQISSS AVPSQFPSAT SSQPLIVSDG PSSASISSGQ ITAEAQSLNN IQREKISGDM  360
SIWLKKKWTP GEVPEEEPPD ALVQIDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.21e-64C3H family protein