PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0391201
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 227aa    MW: 25384.6 Da    PI: 8.7253
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0391201genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.5e-055274123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y+C+ C++ F++   L  H+++H
  RcHm_v2.0_Chr4g0391201 52 YTCSFCKREFKSAQALGGHMNVH 74
                            9********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MQRNTGFCKS LVKDHITTMT RATDGDSNNK KMKNIEDDED YMNVYPWPPR SYTCSFCKRE  60
FKSAQALGGH MNVHRKDRAR LRSSPPTDFI GQYTHSTILN LNLKPNPNPN FASSPPPSSS  120
PFSSVSTRQL PPLTTSSRSV PSWISQPSHP PSTFPSPFDT CHSENMKWAV GGTLSTPLKL  180
KTLDLSTQMK INTESQEDRC MKLDLEIGVL GGNSKDDIDL ELRLGYS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.14e-24C2H2 family protein