PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0391211
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 186aa    MW: 21279.2 Da    PI: 6.2773
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0391211genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000153153123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y+C+ C++ F++   L  H++ H
  RcHm_v2.0_Chr4g0391211 31 YECTFCKRGFTNAQALGGHMNIH 53
                            99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MESWTVPLSP ETSSDEERER DDNSGSAKRS YECTFCKRGF TNAQALGGHM NIHRKDRAKA  60
KQLSNQYRSN EDCISMSASQ FSAPVYTQPA SGYYPVLAHH EHHVQRNYHQ MYYQPSESSA  120
RYYGSLDDDS MSSQSSMSHH VNQELWGANL SLRFSPTGRM EDDDFRMGVR NHEEVDLELR  180
LGHGGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.14e-18C2H2 family protein