PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0392501
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 268aa    MW: 29906.8 Da    PI: 4.7829
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0392501genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.5e-18123173255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GVr+++ +g+++AeIrd +    +  r++lg+f++ae Aa a+++a+ +++g
  RcHm_v2.0_Chr4g0392501 123 SYRGVRRRP-WGKFAAEIRDSTR---HgVRVWLGTFDSAEAAALAYDQAAFAMRG 173
                             69*******.**********422...25*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MGYWDNNHIM SSQSITNTFQ TENSNISDFQ MNYSIFHSPN SDTSSEFSWD ALEFGNTSLP  60
FNENDSEEML LFGMLSKATQ ETTSFETETH NSAASSNPIK EEEVSSDSTS EEENPKTPKK  120
EKSYRGVRRR PWGKFAAEIR DSTRHGVRVW LGTFDSAEAA ALAYDQAAFA MRGSAAVLNF  180
PVERVRESLR DMNCATSDLD GGCSPVVALK RKHSMRRKLG NKKSRMERDV RLENVVVFED  240
LGADYLEQLL SSSESTSTTT AAAAAANW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.16e-61ERF family protein